Init Institute vault: .gitignore, README, TEAM roster, decision log
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.gitignore
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.gitignore
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# The Institute vault — what never enters git.
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# Rule: git tracks knowledge + code; heavy binaries live on disk and back up separately.
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# (Git LFS for scientific data — OpenSim meshes, checkpoints — is a later option.)
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# --- Python ---
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__pycache__/
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*.py[cod]
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*.egg-info/
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.venv/
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venv/
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.pytest_cache/
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*.so
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# --- Scientific / engineering binaries ---
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*.vtu
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*.vtp
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*.stl
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*.obj
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*.osim # large OpenSim models; force-add small canonical ones with `git add -f`
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*.pt
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*.pth
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*.ckpt
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*.onnx
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*.npz
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*.h5
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*.hdf5
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# --- Media / renders (generated) ---
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*.mp4
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*.gif
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*.mov
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*.png # generated renders; force-add canonical figures explicitly
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*.jpg
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*.jpeg
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*.tiff
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# --- LaTeX / build outputs (commit final manuscripts explicitly) ---
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build/
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dist/
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*.log
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*.aux
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*.out
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*.toc
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*.bbl
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*.blg
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*.synctex.gz
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*.fdb_latexmk
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*.fls
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*.pdf
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# --- OS / editor noise ---
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.DS_Store
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Thumbs.db
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*.swp
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.obsidian/workspace.json
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.obsidian/workspace-mobile.json
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# --- Local secrets ---
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.env
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*.local
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README.md
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README.md
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# The Institute — Shared Vault
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Shared knowledge base for Elliot's agent team ("The Institute"). Organized by
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**life-domain, not by worker**: agents are workers on shared projects, so folders
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reflect the domain of the work (PhD, fitness, nutrition…), not who did it.
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## Layout (canonical)
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```
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00_Inbox/ capture — everything lands here first, then gets filed
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10_System/ dashboards, templates, design systems, branding assets
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20_Schedule/ daily notes, time management
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30_PhD/ the thesis (see subfolders below)
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40_Personal/ Aesthetics / Fitness / Nutrition
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30_PhD/
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01_Workbench/ data (raw/processed), notes, scripts
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02_Deliverables/ presentations, reports, papers
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03_Meetings/
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04_Logistics/ inbox / processed / archive
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05_Literature/ inbox / processed / archive ← Clara
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06_Projects/ code repos ← Dexter
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```
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## Editing discipline (why there's no merge chaos)
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1. **Pull before you work, commit often, push after.** Small commits, scoped messages.
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2. **Read-only on files you don't own.** Agents read Elliot's personal files and plan docs; they never rewrite them.
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3. **Hand off via `00_Inbox/` notes or Kanban comments**, not by editing another agent's in-progress draft in place.
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4. **Binaries are not versioned** (see `.gitignore`) — meshes, checkpoints, renders live on disk and back up separately.
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## Meta-files (owned by Eleanor / the Institute, not domain content)
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- `TEAM.md` — roster + who owns what.
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- `README.md` — this file.
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- `.gitignore` — what never enters git.
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- `_institute/` — team-wide decision log, handoff notes, runbooks.
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## Backups
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The vault is a git repo: `git clone` / `git bundle` is a full export at any time.
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A scheduled backup snapshot will be added.
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TEAM.md
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TEAM.md
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# The Institute — Team Roster
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Elliot's multi-agent team. Each member is a Hermes profile; they coordinate
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through this vault and the Kanban board. Defer to the named owner for questions
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in their domain.
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| Call sign | Profile | Role | Owns (vault) |
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|---|---|---|---|
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| Eleanor | `eleanor` | Chief of Staff / orchestrator | `10_System`, `20_Schedule`, oversight, backlog |
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| Quill | `quill` | Technical PM / milestones (planned) | `20_Schedule`, `Master_PhD_Plan` |
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| Clara | `clara` | Senior Research Scientist | `30_PhD/05_Literature` |
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| Dexter | `dexter` | Lead Systems & Soft Robotics Engineer | `30_PhD/06_Projects`, `30_PhD/01_Workbench/Scripts` |
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| Doc | `doc` | Academic Mentor & Career Strategist | `30_PhD` narrative + roadmap |
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| Otis | `otis` | Physical Performance (planned) | `40_Personal/Fitness` |
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| Clover | `clover` | Executive Dietitian (planned) | `40_Personal/Nutrition` |
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| Coco | `coco` | Wardrobe Stylist (planned) | `40_Personal/Aesthetics` |
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## Handoff rules
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- Anything crossing domains opens a thread in `00_Inbox/` or a Kanban card.
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- Route: engineering → Dexter · literature → Clara · narrative/career → Doc ·
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ops/scheduling → Eleanor · physical → Otis · nutrition → Clover · wardrobe → Coco.
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- Never edit another agent's in-progress draft in place — comment or drop an inbox note instead.
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_institute/decision-log.md
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_institute/decision-log.md
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# Institute Decision Log
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Timestamped decisions about the team, vault structure, and coordination.
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## 2026-09-07 — Pilot foundation
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- Pilot cohort: Clara (research), Dexter (engineer), Doc (mentor); scale to 8 after the loop is proven.
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- Vault organized by life-domain, not worker. Agents are workers on shared projects.
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- Binaries (meshes, checkpoints, renders) are gitignored; git tracks knowledge + code.
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- Oversight = Eleanor + the Kanban board; no separate HR meta-agent.
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- Surface = WebUI avatar chips; Forgejo (Phase B) = remote sync + web view + backup; git over SSH.
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